2014 Publications

 

 

1.            Luger, K. and Phillips, S.E.V. (2014) "Nucleic acid movers and shakers" Current Opinion in Structural Biology, 24, v-vii
 

2.            Daniels, A.D., Campeotto, I., van der Kamp, M.W., Bolt, A.H., Trinh, C.H., Phillips, S.E.V., Pearson, A.R., Nelson, A, Mullholland, A.J. and Berry, A. (2014) "The reaction mechanism of N-acetylneuraminic acid lyase revealed by a combination of crystallography, QM/MM simulation and mutagenesis" ACS Chem. Biol, 9, 1025-1032.


3.            Mathavan, I., Severine, Z., Mehmood, S., Choudhury, H.G., Goulard, C., Li, Y., Robinson, C.V., Rebuffat, S., Beis, K. (2014) "Structural basis for hijacking siderophore receptors by antimicrobial lasso peptides", Nature Chemical biology, DOI: 10.1038/NCHEMBIO.1499


4.            Choudhury, H.G., Tong, Z., Mathavana, I., Lie, Y., Iwata, S., Zirahe. S., Rebuffate, S., Van Veend, H.W., Beis, Konstantinos., (2014) "Structure of an antibacterial peptide ATP-binding cassette transporter in a novel outward occluded state " PNAS, 111, (25), 9145-9150


5.            Baggaley, Elizabeth., Botchway, Stanley W., Haycock, John W., Morris, Hayley., Sazanovich, Igor V., Williams, Gareth J.A., and Weinstein, Julia A., (2014) "Long-lived metal complexes open up microsecond lifetime imaging microscopy under multiphoton excitation: from FLIM to PLIM and beyond" Chem. Sci.,5, 879


6.            Pascut, G.L., Haule, K., Gutmann, M.J., Barnett, S.A., Bombardi, A., Artyukhin, S., Birol, T., Vanderbilt, D., Yang, J.J., Cheong, S.-W., and Kiryukhin, V., (2014) "Dimerization-Induced Cross-Layer Quasi-Two-Dimensionality in Metallic IrTe2" Phys. Rev. Lett. 112, 086402


7.            Keane, Pa´raic M., Wojdyla, Michal., Doorley, Gerard W., Kelly, John M., Parker, Anthony W., Clark, Ian P., Greetham, Gregory M., Towrie, Michael,. Magnoa, Luıs M., and Quinn, Susan J,. (2014) "Long-lived excited states in i-motif DNA studied by picosecond time-resolved IR spectroscopy" Chem. Commun., 50, 2990-2992


8.           Bird L.E., Rada H., Flanagan J., Diprose J.M., Gilbert R.J., Owens R.J., (2014) "Application of In-FusionTM cloning for the parallel construction of E. coli expression vectors". Methods Mol Biol. 1116:209-34.


9.           Tiede C., Tang A.A., Deacon S.E., Mandal U., Nettleship J.E., Owen R.L., George S.E., Harrison D.J., Owens R.J., Tomlinson D.C., McPherson M.J., (2014) "Adhiron: a stable and versatile peptide display scaffold for molecular recognition applications". Protein Eng Des Sel. 2014 Mar 25. [Epub ahead of print].


10.        Puncreobutr, C., Phillion, A.B., Fife, J.L., Lee, P.D., (2014) "Coupling in situ synchrotron x-ray tomographic microscopy and numerical simulation to quantify the influence of intermetallic formation on permeability in aluminium-silicon-copper alloys", Acta Mat., 64, 316-325


11.        Connell, L.S., Romer, F., Su´arez Men´endez, M., Valliant, E.M., Lee, P.D., Smith M.E., Hanna, J.V., Jones, J. R., (2014) "Chemical characterisation and fabrication of chitosan- silica hybrid scaffolds with 3-glycidoxypropyl trimethoxysilane", J. Mater. Chem. B, Vol.2, 668-680.


12.         Puncreobutr, C., Lee, P.D., Kareh, K.M., Connolley, T., Fife, J.L., Phillion, A.B., (2014) "Influence of Fe-rich intermetallics on solidification defects in aluminium-silicon-copper alloys", Acta Mat., 68, 42-51.


13.        Cooper S.J., Eastwood D.S., Gelb J., Damblanc G., Brett D.J.L., Bradley R.S., Withers P.J., Lee P.D., Marquis A.J., Brandon N.P., Shearing P.R., (2014) "Image based modelling of microstructural heterogeneity in LiFePO4 electrodes for Li-ion batteries", J. Power Sources, 247, 1033-1039.


14.        Miller, J., Yuan, L., Lee, P.D., Pollack, T., (2014) "Simulation of Diffusion-Limited Lateral Growth of Dendrites during Directional Solidifiction via Liquid Metal Cooling", Acta Mat., 69, 47-59.


15.        Mahony O., Yue S., Turdean-Ionescu C., Hanna J.V., Smith M.E., Lee P.D., Jones J.R. (2014) "Silica-gelatin hybrids for tissue regeneration: inter-relationships between the process variables." J. Sol-Gel Sci.Tech., 69(2), 288-298


16.         Pankhurst, M.J., Dobson, K.J., Morgan D.J., Loughlin, S.C., Thordarson, T., Lee, P.D., Courtois, L., (2014) " Monitoring the Magmas Fuelling Volcanoes in Near real time Using Xray Micro Computed Tomography" J. Petrology, 55(3), 671-684


17.         Staines, K.A., Parker, S., Poulet, B., Mirczuk, S., Fowkes, R., Hopkinson, M., Madi, K., Lee, P.D., Pitsilides, A.A. (2014) " Strt/Ort mice exhibit an inherent endochondral growth defect and redeploy transient chondrocyte behaviours prior to ostearthritis onset", Ostearthritis and Cartilage, 22


18.        Eastwood, D.S., Bradley, R.S., Tariq, F., Cooper, S.J., Taiwo, O., Gelb, J., Merkle, A., Brett, D.J.L., Brandon, N.P., Withers, P.J., Lee , P.D., Shearing, P.R. (2014) "The Application of Phase Contrast X-ray Techniques for Imaging Li-ion Battery Electrodes", Nuclear Instruments and Methods B, 324 118-123


19.         Eastwood, D.S., Yufit, V., Gelb, J., Gu, A., Bradley, R.S., Harris, S.J., Brett, D.J.L., Brandon, N.P., Lee, P.D., Withers, P.J., Shearing P.R., (2014) "Lithiation induced dilation mapping in a Li-ion battery electrode by 3D X-ray Microscopy and Digital Volume Correlation", Advanced Energy Materials, 4, 57-63


20.         Robinson, J.B., Darr, J.A., Eastwood, D.S., Hinds, G., Lee, P.D., Shearing, P.R., Taiwo, O.O., Brett, DJL (2014) "Non-uniform temperature distribution in Li-ion batteries during discharge - A combined thermal imaging, X-ray micro-tomography and electrochemical impedance approach" Journal of Power Sources, 252, 51-57


21.        Cooper, S.J., Eastwood, D.S., Gelb, J., Damblanc, G., Brett, D.J.L., Bradley, R.S., Withers, P.J., Lee, P.D., Marquis, A.J., Brandon, N.P., Shearing P.R. (2014) "Image based modelling of microstructural heterogeneity in LiFePo4 electrodes for Li-ion batteries" Journal of Power Sources, 247, 1033-1039


22.    Harrison, .SE., Collins-McIntyre, L.J., Li, S., Baker, A.A., Shelford, L.R., Huo, Y., Pushp, A., Parkin, S.S.P., Harris, J.S., Arenholz, E., van der Laan, G., Hesjedal, T., (2014) "Study of Gd-doped Bi2Te3 thin films: Molecular beam epitaxy growth and magnetic properties"Journal of Applied Physics 115, 2


23.         Schönherr, P., Baker, A.A., Hesjedal, T., P Kusch, Reich, S., "EPJ Engineering of BiSe nanowires by laser cutting" (2014) Applied Physics 66


24.         Schönherr, P., Collins-McIntyre, L.J., Zhang, S., Kusch, P., Reich, S., Giles, T., Daisenberger, D., Prabhakaran, D., Hesjedal T., (2014) "Vapour-liquid-solid growth of ternary Bi2Se2Te nanowires", Nanoscale research letters 9, 127-


25.        Baker, A.A., Davies, C.S., Figueroa, A.I., Shelford, L.R., van der Laan, G., Hesjedal, T., (2014) "Modelling ferromagnetic resonance in magnetic multilayers", Journal of Applied Physics 115, 17D140


26.         Pinfield, V., and Scott, D.J., (2014). "Anomalous Small Angle X-ray Scattering Simulations: proof of concept for distance measurements for nanoparticle-labelled biomacromolecules in solution". Plos One 9 (4): e95664. doi:10.1371/journal.pone.0095664


27.         Portman, K.L., Long, J., Carr, S., Briand, L., Winzor, D.J. and Scott, D.J. (2014)." Enthalpy/entropy compensation effects from cavity desolvation underpin broad ligand binding selectivity for rat OBP3". Biochemistry 53 (14), pp 2371-2379


28.        Burdet, N., Morrison, G.R., Huang, X., Shi, Xiaowen., Clark, J.N., Zhang, F., Civita, M., Harder, R., and Robinson I., (2014) "Observations of artefacts in the x-ray ptychography method", Optics Express 22 10294

29.         Xiong, G., Moutanabir, O., Reiche, Ma., Harder, R., and Robinson, I., (2014) "Coherent Diffraction characterisation of strain in Silicon-on-Insulator structures", accepted in Advanced Materials


30.         Liang, M., Harder, Ross., and Robinson, I.K., (2014) "Brownian Motion Studies of Viscoelastic Colloidal Gels by Rotational X-ray Tracking", IUCrJ 1 172-178


31.         Shemilt, L.A., Estandarte, A.K.C., Yusuf, M., and Robinson, I.K., (2014) "Scanning Electron Microscope studies of human metaphase chromosomes", Philosophical Transactions of the Royal Society A 372 20130144


32.        Diemoz, P.C., Endrizzi, M. A., Bravin, Robinson, I.K., and Olivo, A., (2014) "Sensitivity of edge illumination x-ray phase-contrast imaging" Philosophical Transactions of the Royal Society A 372 20130128


33.        Endrizzi, M., Diemoz, P.C., Millard, T.P., Jones, L.J., Speller, R.D., Robinson I.K., and Olivo, Al., (2014) "Hard X-ray dark-field imaging with incoherent sample illumination", Applied Physics Letters 104 024106


34.        Chen. Bo., Hashimoto, Teruo., Vergeer, Frank., Burgess, Andrew., Thompson, G., and Robinson, I., (2014) "Three-Dimensional Analysis of the Spatial Distribution of Iron Oxide Particles in a Decorative Coating by Electron Microscopic Imaging", Progress in Organic Coatings 77 1069-1072


35.        Berenguer, Felisa., Bean, R.J., Bozec, L., Vila-Comamala, J., Zhang, F., Kewish, C.M., Bunk, O., Rodenburg, J.M., and Robinson, I.K., (2014) "Coherent X-ray Imaging of Collagen Fibril Distributions within Intact Tendons", Biophysical Journal 106 459-466


36.        Yusuf, M., Parmar, N., Bhella G.K., and Robinson, I.K., 2014) "A simple filtration technique for obtaining purified human chromosomes in suspension", accepted in BioTechniques


37.        Huang, X., Yang, H., Harder, R., Hwu, Y., Robinson, I.K,. and Chu, Y.S. (2014) "Effects of overlap uniformness for Ptychography", Optics Express 22 12634


38.        Clark, J.N., Huang, X., Harder R.J., and Robinson, I.K. , (2014) "Dynamic imaging using ptychography", Physical Review Letters 112 113901


39.         Diemoz, P.C., Endrizzi, M,. Hagen, C.K., Rau, C., Bravin, A,. Speller, R.D., Robinson I.K., and Olivo, A., (2014) "Edge illumination X-ray phase-contrast imaging: nanoradian sensitivity at synchrotrons and translation to conventional sources", Journal of Physics: Conference Series 499 012006


40.        Needham, S.R; Zanetti-Domingues, L.C; Hirsch, M., Rolfe, D. J; Tynan, C.J; Roberts, S K; Martin-Fernandez, M. L; Clarke, David T. (2014). "Structure-function relationships and supramolecular organization of the EGFR (epidermal growth factor receptor) on the cell surface" Biochem. Soc. Trans .42 Issue:1: 114-9


41.        Sui, T., Sandholzer, M.A., Lunt, A.J.G., Baimpas, N., Smith, A., Landini, G., Korsunsky, A.M.,(2014)."In situ X-ray scattering evaluation of heat-induced ultrastructural changes in dental tissues and synthetic hydroxyapatite". Journal of The Royal Society Interface 11


42.        Sui, T., Korsunsky, A.M.,(2014)."Hierarchical Modeling of Elastic Behavior of Human Dental Tissue Based on Synchrotron Diff raction Characterization". Advanced Healthcare Materials, John Wiley & Sons, Inc., Chapter 7


43.        Sandholzer, M.A.,Sui, T., Korsunsky, A.M., Damien Walmsley, A., Lumley, P.J., Landini, G., ,(2014)."X‐ray Scattering Evaluation of Ultrastructural Changes in Human Dental Tissues with Thermal Treatment". Journal of forensic sciences 59, 769-774


44.        Sui, T., Sandholzer, M.A., Le Bourhis, E., Baimpas, N., Landini, G., Korsunsky, A.M.,(2014)."Structure-mechanical function relations at nano-scale in heat-affected human dental tissue". J Mech Behav Biomed Mater.32, 113-124


45.        Sebastiani, M., Eberl, C., Bemporad, E., Korsunsky, A.M., Nix, W.D., Carassiti, F.,(2014)."Focused ion beam four-slot milling for Poisson's ratio and residual stress evaluation at the micron scale". Surface and Coatings Technology


46.         Korsunsky, A.M., (2014)."Stress and Deformation Analysis at the Micro-Scale", Proceedings of the 9th International Conference on MicroManufacturing (ICOMM 2014)


47.         Ma, L., Zhao, J., Korsunsky, A.M., (2014)."Fundamental elastic singular solutions for a layer perfectly bonded to a dissimilar substrate"


48.         Nguyen, G.D., Korsunsky, A.M., Einav,I., (2014)."A constitutive modelling framework featuring two scales of behaviour: fundamentals and applications to quasi-brittle failure", Engineering Fracture Mechanics 115, 221-240


49.         Sui, T., Lunt, A.J.G., Baimpas, N., Sandholzer, M.A., Hu, J., Dolbnya, I.P., Landini, G., Korsunsky, A.M., (2014)."Hierarchical modelling of in situ elastic deformation of human enamel based on photoelastic and diffraction analysis of stresses and strains", Acta Biomaterialia 10, 343-354


50.         Sui, T.,Sandholzer, M.A., Baimpas, N., Lunt, A.J.G., Dolbnya, I.P., Hu, J., Damien  Walmsley, A., Lumley, P.J., Landini, G., Korsunsky, A.M., (2014)."Hierarchical Modelling and X-ray Analysis of Human Dentine and Enamel", Proceedings of the International MultiConference of Engineers and Computer Scientists


51.         Kim, T.,Song, B., Cibin, G., Dent, A., Li, L., Korsunsky, A.M., (2014)."A Comparative Spectroscopic Study of Graphene-coated vs Pristine Li (Mn, Ni, Co) Oxide Materials for Lithium-ion Battery Cathodes", Proceedings of the International MultiConference of Engineers and Computer Scientists


52.         Song, X., Xie, M., Hofmann, F., Illston, T., Connolley, T., Reinhard, C., Atwood, R.C., Connor, L., Drakopoulos, M., Frampton, L., Korsunsky, A.M.(2014)."Residual stresses and microstructure in Powder Bed Direct Laser Deposition (PB DLD) samples", International Journal of Material Forming


53.         Sui, T., Sandholzer, M.A., Le Bourhis, E., Baimpas, N., Landini, G., Korsunsky, A.M., (2014)."Nano-Scale Thermo-Mechanical Structure-Property Relationships in Human Dental Tissues Studied", Proceedings of the 15th International Conference on Biomedical Engineering, Springer International Publishing


54.         Sui, T., Li, T., Sandholzer, M.A., Le Bourhis, E., Zeng, K., Landini, G., Korsunsky, A.M., (2014)."Structure-property characterization of the dentine-enamel junction (DEJ)", Proceedings of World Congress on Engineering 2014


55.         Ying, S., Sui, T., Lunt, A.J.G., Reed, R.C., Korsunsky A.M., (2014)."On the Cyclic Deformation and Residual Stress in Ni-base Single Crystal Superalloys", Proceedings of World Congress on Engineering 2014


56.        Roberts, O., Lunt, A. J. G., Ying, S., Sui, T., Baimpas, N., Dolbnya, I.P, Parkes, M., Dini, D., Kreynin, S.M., Neo T.K., Korsunsky, A.M., (2014)."A Study of Phase Transformation at the Surface of a Zirconia Ceramic", Proceedings of World Congress on Engineering 2014


57.        Borisenko, K. B., and Kirkland A. I., (2014) "High resolution electron exit wave reconstruction from a diffraction pattern using Gaussian basis decomposition" Journal of Physics: Conference Series, in press.


58.        Huang, C., Borisenko, K. B., and Kirkland A. I., (2014) "Exit wave reconstruction of radiation-sensitive materials from low-dose data" Journal of Physics: Conference Series, in press.


59.        Warren, M. R., Easun, T. L., Brayshaw, S. K., Deeth, R. J., George, M. W., Johnson, A. L., Schiffers, S., Teat, S. J., Warren, A. J., Warren, J. E., Wilson, C. C., Woodall, C. H., and Raithby, P. R. (2014) Solid-State Interconversions: Unique 100% Reversible Transformations between the Ground and Metastable States in Single-Crystals of a Series of Nickel(II) Nitro Complexes, Chemistry - A European Journal 20, 5468-5477.


60.        Vieria, D., Figueiredo, T. A., Verma, A., Sobral, R. G., Ludovice, A. M., de Lencastre, H., and Trincao, J. (2014) Purification, crystallization and preliminary X-ray diffraction analysis of GatD, a glutamine amidotransferase-like protein from Staphylococcus aureus peptidoglycan, Acta Crystallogr., Sect. F, 70


61.         Hatcher, L. E., Christensen, J., Hamilton, M. L., Trincao, J., Allan, D. R., Warren, M. R., Clarke, I. P., Towrie, M., Fuertes, D. S., Wilson, C. C., Woodall, C. H., and Raithby, P. R. (2014) Steady-State and Pseudo-Steady-State Photocrystallographic Studies on Linkage Isomers of [Ni(Et4dien)(?2-O,ON)(?1-NO2)]: Identification of a New Linkage Isomer, Chemistry - A European Journal 20, 3128-3134.