2012 Publications


Adamczyk, Katrin; Candelaresi, Marco; Robb, Kirsty; Gumiero, Andrea; Walsh, Martin A.; Parker, Anthony W.; Hoskisson, Paul A.; Tucker, Nicholas P.; Hunt, Neil T. (2012) Measuring protein dynamics with ultrafast two-dimensional infrared spectroscopy Measurement Science & Technology, 23, 062001 *


Axford D; Owen RL; Aishima J; Foadi J; Morgan AW; Robinson JI; Nettleship JE; Owens RJ; Moraes I; Fry EE; Grimes JM; Harlos K; Kotecha A; Ren J; Sutton G; Walter TS; Stuart DI, Evans G; (2012) In situ macromolecular crystallography using microbeams. Acta CrystD68, 592-600. *


Berry J-L, Phelan MM , Collins RF, Adomavicius T, Tønjum T, Frye SA, Bird LE, Owens RJ, Ford RC, Lian L-Y & Derrick JP. (2012). Structure and Assembly of an Outer Membrane Channel for Type IV Pili in Neisseria meningitidis. PLoS Pathogens 8 (9):e1002923.


Bisby, Roger H.; Botchway, Stanley W.; Greetham, Greg M.; Hadfield, John A.; McGown, Alan T.; Parker, Anthony W.; Scherer, Kathrin M.; Towrie, Mike (2012) Time-resolved nanosecond fluorescence lifetime imaging and picosecond infrared spectroscopy of combretastatin A-4 in solution and in cellular systems. Measurement Science & Technology, 23, 084001


Bisby, Roger H.; Botchway, Stanley W.; Hadfield, John A.; McGown, Alan T.; Parker, Anthony W.; Scherer, Kathrin M. (2012) Fluorescence lifetime imaging of E-combretastatin uptake and distribution in live mammalian cells. European Journal Of Cancer, 48, 1896-1903


Bisby, Roger; Botchway, Stanley; Crisostomo, Ana; Parker, Anthony; Scherer, Kathrin (2012) Fluorescence Lifetime Imaging of Propranolol Uptake in Living Glial C6 Cells. Spectroscopy-An International Journal,  27, 533-540


Borisenko K B;   Moldovan G;  Kirkland A I;  Van Dyck D;   Tang H-Y;   Chen, F-R;   (2012)  Toward electron exit wave tomography of amorphous materials at atomic resolution, Journal of Alloys and Compounds 536, S94-S98


Botchway, Stanley W.; Reynolds, Pamela; Parker, Anthony W.; et al.  (2012) laser-induced radiation microbeam technology and simultaneous real-time fluorescence imaging on live cells  conn, pm.  Imaging and spectroscopic analysis of living cells: optical and spectroscopic techniques.  Methods in Enzymology  504,  3-28.


Burley, Jonathan C.; Alkhalil, Aalae; Bloomfield, Matthew; Matousek, Pavel (2012) Transmission Raman spectroscopy for quality control in model cocrystal tablets. Analyst, 137, 3052-3057


Clark, Ian P.; George, Michael W.; Greetham, Gregory M.; Harvey, Emma C.; Long, Conor; Manton, Jennifer C.; McArdle, Hazel; Pryce, Mary T. (2012) Photochemistry of (eta(6)-Anisole)Cr(CO)(3) and (eta(6)-Thioanisole)Cr(CO)(3): Evidence for a Photoinduced Haptotropic Shift of the Thioanisole Ligand, a Picosecond Time-Resolved Infrared Spectroscopy and Density Functional Theory Investigation. Journal Of Physical Chemistry A . 116, 962-969


Duffy, Paul; Magno, Luis M.; Yadav, Rahul B.; Roberts, Selene K.; Ward, Andrew D.; Botchway, Stanley W.; Colavita, Paula E.; Quinn, Susan J. (2012) Incandescent porous carbon microspheres to light up cells: solution phenomena and cellular uptake. Journal Of Materials Chemistry. 22, 432-439


Dunlop, J.A;  Garwood, R.J;  Accepted.  (2012)   Tomographic reconstruction and palaeobiology of the trigonotarbid arachnid Eophrynus prestvicii (Buckland, 1837). Acta Palaeontologica Polonica: In press. doi:10.4202/apP 0032


Garwood, R.J;  Ross, A;  Sotty, D;  Chabard, D;  Charbonnier, S;  Sutton, M;  Withers, P;  (2012)  Tomographic Reconstruction of Neopterous Carboniferous Insect Nymphs. PLoS one 7(9) e45779 *


Garwood, Russell; (2012),  Reach out to defend evolution,  Nature485,  15370-15389


Hofmann, A M;  Abbey, F;  Song, B;  Belnoue, X;  Mocuta, J P;  Dolbnya, C;  (2012)  Analysis of the internal structure and lattice (mis)orientation in individual grains of deformed CP nickel polycrystals by synchrotron X-ray micro-diffraction and microscopy, Korsunsky,  I., Intl J Fatigue, 42, 1-13.


Hofmann, F;  Abbey, B;  Connor, L;  Baimpas, N;  Song, X;  Keegan, S;  Korsunsky, AM;  (2012)  Imaging of grain-level orientation and strain in thicker metallic polycrystals by high energy transmission micro-beam Laue (HETL) diffraction techniques,  Intl J Mater Res, 103(2), 192-199.


Hofmann, F;  Song, X;  Abbey, B;  Jun, T S;  Korsunsky, AM; (2012)  High-energy transmission Laue micro-beam X-ray diffraction: a probe for intra-granular lattice orientation and elastic strain in thicker samples,  J Sync Rad., 19, 307-318.


Hu, Zhiyuan; Pantos, G. Dan; Kuganathan, Navaratnarajah; Arrowsmith, Rory L.; Jacobs, Robert M. J.; Kociok-Koehn, Gabriele; O'Byrne, Justin; Jurkschat, Kerstin; Burgos, Pierre; Tyrrell, Rex M.; Botchway, Stan W.; Sanders; Jeremy K. M. and Pascu, Sofia I.(2012) Interactions Between Amino Acid-Tagged Naphthalenediimide and Single Walled Carbon Nanotubes for the Design and Construction of New Bioimaging Probes. Advanced Functional Materials. 22, 503-518 *


Husband RJ, Loa I, Stinton GW, Evans SR, Ackland GJ and McMahon MI. (2012) Europium-IV: An Incommensurately Modulated Crystal Structure in the Lanthanides, Phys. Rev. Lett. 109, 095503


Keane, Paraic M.; Wojdyla, Michal; Doorley, Gerard W.; Kelly, John M.; Clark, Ian P.; Parker, Anthony W.; Greetham, Gregory M.; Towrie, Michael; Magno, Luis M.; Quinn, Susan J. (2012) Ultrafast IR spectroscopy of polymeric cytosine nucleic acids reveal the long-lived species is due to a localised state. Physical Chemistry Chemical Physics. 14, 6307-6311


Krissinel, E; (2012). Enhanced Fold Recognition Using Efficient Short Fragment Clustering. Journal of Molecular Biochemistry, 1 (2), 76-85


Kühl, G;  Bergmann, A;  Rust, J;  Garwood, R J;  Dunlop, J. A; (2012)  Redescription and palaeobiology of Palaeoscorpius devonicus Lehmann, 1944 from the Lower Devonian Hunsrück Slate of Germany. Palaeontology 55(4):775-787


Lobley CM, Aller P, Douangamath A, Reddivari Y, Bumann M, Bird LE, Nettleship JE, Brandao-Neto J, Owens RJ, O'Toole PW, Walsh MA. (2012). Structure of ribose5-phosphate isomerase from the probiotic bacterium Lactobacillus salivarius UCC118. Acta Cryst. F68 427-33. *


Lukacs, Andras; Zhao, Rui-Kun; Haigney, Allison; Brust, Richard; Greetham, Gregory M.; Towrie, Michael; Tonge, Peter J.; Meech, Stephen R. (2012) Excited State Structure and Dynamics of the Neutral and Anionic Flavin Radical Revealed by Ultrafast Transient Mid-IR to Visible Spectroscopy. Journal Of Physical Chemistry B. 116, 5810-5818


Martin, R.A;  Yue, S;  Hanna, J V;  Lee, P D;  Newport, R J;  Smith, M.E;  Jones, J R;  (2012)  Characterising the hierarchical structures of bioactive sol-gel glass and hybrid scaffolds for bone regeneration. Phil. Trans. R. Soc. A 370, 1422-1443


Martin-Fernandez, M.L (2012). Human Epidermal Growth Factor Receptor (HER1) aligned on the plasma Membrane Adopts Key Features of Drosophila EGFR Asymmetry. Biochem. Soc. Trans. 40(1):184-188


Martinière, Alexandre; Lavagi, Irene; Nageswaran, Gayathri; Rolfe, Daniel J.; Maneta-Peyret, Lilly; Doan-Trung Luu; Botchway, Stanley W.; Webb, Stephen E. D.; Mongrand, Sebastien; Maurel, Christophe; Martin-Fernandez; (2012) Cell wall constrains lateral diffusion of plant plasma-membrane proteins. Proceedings Of The National Academy Of Sciences Of The United States Of America. 109, 12805- 12810


McGoverin, Cushla M.; Hargreaves, Michael D.; Matousek, Pavel; Gordon, Keith C (2012) Pharmaceutical polymorphs quantified with transmission Raman spectroscopy. Journal Of Raman Spectroscopy. 43, 280-285


Mills, K.C;  Ramirez-Lopez, P.E;  Lee, P.D;  (2012)   Some Insights into Mechanisms Involved in Continuous Casting. High Temp. Mat. & Proc. 31(3):221-229


Moorhouse, S.J;  Vranješ, N;  Jupe, A;  Drakopoulos, M;   O'Hare, D;  (2012)  The Oxford Diamond In Situ Cell (ODISC) for Studying Chemical Reactions using Time-Resolved X-ray Diffraction.  Rev. Sci. Instrum., 83, 084101.


Mueller-Harvey, Irene; Feucht, Walter; Polster, Juergen; Trnkova, Lucie; Burgos, Pierre; Parker, Anthony W.; Botchway, Stanley W. (2012) Two-photon excitation with pico-second fluorescence lifetime imaging to detect nuclear association of flavanols. Analytica Chimica Acta. 719, 68-75


Nettleship JE, Flanagan A, Rahman-Huq N, Hamer R, Owens RJ. (2012) Converting monoclonal antibodies into fab fragments for transient expression in Mammalian cells.   Methods Mol Biol. 801,137-59.


O'Brien, M.G;  Jacques, S.D.M;  Di Michiel, M;  Barnes, P;  Weckhuysen, B.M;  Beale, A.M;  (2012)  Active phase evolution in single Ni/Al2O3 methanation catalyst bodies studied in real time using combined m-XRD-CT and m-absorption-CT. Chemical Science, 3, 509-523


Owen RL, Axford D, Nettleship JE,  Owens RJ, Robinson JI, Morgan AW, Doré AS, Lebon G,  Tate CG, Fry EE, Ren J, Stuart DI, and Evans G. (2012). Outrunning free radicals in room-temperature macromolecular crystallography. Acta Cryst.  D68, 810-818. *


Phillips, S.E.V. and Luger, K. (2012) Proteins for packaging, partitioning, processing and proofing of nucleic acids. Current Opinion in Structural Biology, 22, 62-64.


Puncreobutr, C;  Lee, P.D;  Hamilton, R.W;  Phillion, A.B;  (2012)  Quantitative 3D characterization of solidification structure and defect evolution in Al alloys, JOM 64, Issue 1,  89-95


Rameriz Lopez, P.E;  Sjöström, U;  Jonsson, T;  Lee, P.D;  Mills, K.C;  Petäjäjärvi, M;  Pirinen, J;  (2012)  Industrial application of a numerical model to simulate lubrication, mould oscillation, solidification and defect formation during continuous casting. Mat. Sci. Eng. 33, 012013


Roberts, Selene K.; Tynan, Christopher J.; Winn, Martyn; et al.  (FEB 2012)  Investigating extracellular in situ EGFR structure and conformational changes using FRET microscopy.  Biochem. Soc. Trans. 40   189-194.


Rose, R. A.; Greaves, S. J.; Abou-Chahine, F.; Glowacki, D. R.; Oliver, T. A. A.; Ashfold, M. N. R.; Clark, I. P.; Greetham, G. M.; Towrie, M.; Orr-Ewing, A. J. (2012) Reaction dynamics of CN radicals with tetrahydrofuran in liquid solutions. Physical Chemistry Chemical Physics. 14, 10424-10437


Sainsbury, Sarah;  Ren, Jingshan;  Saunders, Nigel J;  Stuart, David;  Raymond, I;  Owens, J;  (2012),  Structure of the regulatory domain of the LysR family regulator NMB2055 (MetR-like protein) from Neisseria meningitidis,  Acta CrystF68,  730-737


Scuffham, J.W;  Wilson, M.D;  Seller, P;  Veale, M.C;  Sellin, P.J;  Jacques, S.D.M;  Cernik, R.J;  (2012)  A CdTe detector for hyperspectral SPECT imaging. Journal of Instrumentation, 7, P08027


Shelford, LR;  Hesjedal, T;  Collins-McIntyre, L;  Dhesi, SS;  Maccherozzi, F;  van der Laan, G (2012).  Electronic structure of Fe and Co magnetic adatoms on Bi2Te3 surfaces. Phys. Rev. B (Rapid Comms.), 86 (8), 081304 *


Solcan, N, Kwok, J, Fowler, PW, Cameron, AD, Drew, D, Iwata, S and Newstead, S (2012) Alternating access mechanism in the POT family of oligopeptide transporters. EMBO J 31, 3411-3421


Stenning, GBG;  Bowden, GJ;  Gregory, SA;  Beaujour, JML;  de Groot, PAJ;  van der Laan, G;  Shelford, LR;  Bencok, P;  Steadman, P;  Dobrynin, AN;  Hesjedal, T. (2012).   Magnetic reversal in a YFe2 dominated DyFe2/YFe2 multilayer film. Appl. Phys. Lett. 101, 072412 *


Sutton, M.D; Garwood, R.J;  Siveter, David J;  Siveter, Derek J;  (2012) SPIERS and VAXML; A software toolkit for tomographic visualisation and a format for virtual specimen interchange. Palaeontologia Electronica 15(2)5T,14 *


Treacy M M J;  Borisenko K B;  (2012)  The Local Structure of Amorphous Silicon, Science 335, 950-953.


Tynan, Christopher J.; Clarke, David T.; Coles, Benjamin C.; Rolfe, Daniel J.; Martin-Fernandez, Marisa L.; Webb, Stephen E. D. (2012) Multicolour Single Molecule Imaging in Cells with Near Infra-Red Dyes. PLoS One, 7(4) e36265


Vo Trong Nghia, Atwood, Lee, et al (2012)  A fast-converging iterative method for X-ray in-line phase contrast tomography, Applied Physics Letters, in press


Wang C.J; O'Hare. D; (2012)  Synthesis of Layered Double Hydroxides Nanoparticles in a Novel Microemulsion,  J.  Mater. Chem., 22(39), 21125-21130.


Wang, Q;  Zhang, X;  Wang, C J;  Zhu, J;  Guo Z; O'Hare, D;  (2012)  Polypropylene/Layered Double Hydroxide Nanocomposites,  J. Mater Chem., 22 (36), 19113 - 19121.


Wang, Q;  Zhang, X;  Zhu, J;  Guo Z;  O'Hare, D;  (2012)  Preparation of stable dispersions of layered double hydroxides (LDHs) in nonpolar hydrocarbons: new routes to polyolefin/LDH nanocomposites,  Chemical Communications, 7450-7452.


Webb, Stephen E. D.; Zanetti-Domingues, Laura; Coles, Benjamin C.; Rolfe, Daniel J.; Wareham, Richard J.; Martin-Fernandez, Marisa L. (2012) Multicolour single molecule imaging on cells using a supercontinuum source. Biomedical Optics Express. 3, 400-406


Williamson, Abolghasemi;  Lindley, Ward; Lee, (2012)  Thermal imaging and stress analysis for predicting the behaviour and long term performance of flare tips, J. Strain Anal. Eng. Design. In press


Withers, P J;  Lee, P D;  (2012)  Imaging in four dimensions, Ingenia 51, 2 40-45


Wongariyakawee, A;  Schaeffel, F;  Warner J H; O'Hare, D;  (2012)  Surfactant Directed Synthesis of Calcium Aluminum Layered Double Hydroxides Nanoplatelets, J. Mater. Chem., 22 (16), 7751 - 7756.


Yan A;  Sun T, Borisenko K B;   Buchholz D B;   Chang R P H;  Kirkland A I;  Dravid V P;   (2012)  Multi-scale order in amorphous transparent oxide thin films, Journal of Applied Physics 112, 054907.


Yuan, L;  Lee, P.D;  (2012)  A new mechanism for freckle initiation based on microstructural level simulation, Acta Mater 60, 4917-4926


Zhao, Y;  Shinmi, A;  Zhao, X;  Withers, P.J;  Van Boxel, S;  Markocsan, N;  Nylen, P;  Xiao, P;  (2012)    Investigation of interfacial properties of atmospheric plasma sprayed thermal barrier coatings with four-point bending and computed tomography technique.  Surface & Coatings Technology 206 4922-4929